Re: [PyMOL] PyMOL APBS plugin on Ubuntu 12.10 - error after 'run APBS'

2013-06-03 Thread Tobias Beck
Hi Troels, Many thanks for your email! I found a work around for my problem this morning: I copied the pdb2pqr directory from my Mac and now the plugin works. I guess for the Ubuntu pymol package, the pdb2pqr is not installed by default? >svn co svn://svn.code.sf.net/p/pymol/code/trunk/pymol >sv

Re: [PyMOL] PyMOL APBS plugin on Ubuntu 12.10 - error after 'run APBS'

2013-06-03 Thread Troels Emtekær Linnet
Hej Tobias. Some time ago, a year+?, I played around fixing some small things in APBS, to make it easier to work. (Most fixing small path things) Orginal version: http://pymolwiki.org/index.php/APBS Small modified version: http://pymolwiki.org/index.php/Apbsplugin The modified version, is packe

[PyMOL] PyMOL APBS plugin on Ubuntu 12.10 - error after 'run APBS'

2013-05-31 Thread Tobias Beck
Dear all, I am trying to run the ABPS plugin with PyMOL Version 1.6.0.0 on Ubuntu 12.10. I have compiled pymol from source ( http://www.pymolwiki.org/index.php/Linux_Install). When running the plugin, I can set the grid, but after clicking on Run APBS, I get the following error: Unexpected error