Re: [PyMOL] Problem with finding polar contacts

2014-08-27 Thread Thomas Holder
Hi Matt, I just double-checked, this was a major refactoring of the dynamic_measures setting which didn't make it into Open-Source PyMOL yet. So if you don't have access to Incentive PyMOL, then please use the workarounds. Cheers, Thomas On 27 Aug 2014, at 11:25, Matthew Baumgartner wrote:

Re: [PyMOL] Problem with finding polar contacts

2014-08-27 Thread Matthew Baumgartner
Hi, I am running version 1.7.2.1 from the svn (revision 4088) and the bug with dynamic_measures persists. Unsetting it as in that link corrects that issue though. I can send you my files that find the error if you would like. Matt On 08/27/2014 11:19 AM, Thomas Holder wrote: > Hi Matt, > > thi

Re: [PyMOL] Problem with finding polar contacts

2014-08-27 Thread Thomas Holder
Hi Matt, this was a bug with the dynamic_measures setting. It was fixed in PyMOL 1.7.0. So please upgrade PyMOL or read this old post for workarounds: http://sourceforge.net/p/pymol/mailman/pymol-users/thread/501949e8.2080...@users.sourceforge.net/ Cheers, Thomas On 27 Aug 2014, at 10:30, Ma

[PyMOL] Problem with finding polar contacts

2014-08-27 Thread Matthew Baumgartner
Hi, I ran into a bug with the find polar contacts function (distance with mode=2) today. The problem arises when I was trying to find the hydrogen bonds between a ligand and a receptor that had been processed with reduce (http://kinemage.biochem.duke.edu/software/reduce.php). A bug/feature of r