Re: [PyMOL] Problem with MacPyMOL's linalg package

2014-12-01 Thread Spencer Bliven
Thanks for the workaround. It works for me, although it will be a bit hard to incorporate into fully portable scripts. I think I'll avoid using scipy where possible. -Spencer On Wed, Nov 26, 2014 at 6:09 PM, Thomas Holder < thomas.hol...@schrodinger.com> wrote: > Hi Spencer, > > thanks for bring

Re: [PyMOL] Problem with MacPyMOL's linalg package

2014-11-26 Thread Thomas Holder
Hi Spencer, thanks for bringing this to our attention. Since OS X 10.9 ships with scipy preinstalled, you can try this workaround which imports scipy from the system python: import sys sys.path.insert(1, '/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python') import scipy

[PyMOL] Problem with MacPyMOL's linalg package

2014-11-25 Thread Spencer Bliven
Importing scipy.linalg in MacPyMOL crashes the program for me. Probably the linalg module shipped with MacPyMOL is corrupt or incorrectly linked. I've reproduced it with MacPyMOL 1.6 and 1.7, with both X11 and aqua, and on Mac OS 10.9 and 10.10. I discovered this problem because importing the full