Re: [PyMOL] Plugins with newer PyMOL versions

Hi Nikolas, Welcome to the mailing list! For PyVOL specifically, your best bet might be to reach out to the authors of the PyVOL plugin via Github issue (seems like there's been various ones submitted recently) https://github.com/schlessinger-lab/pyvol . However, it doesn't seem like it's been upd

[PyMOL] Plugins with newer PyMOL versions

Hi everyone, just got here. I’ll break the ice with what may be a bit of a trivial question: is anyone experiencing issues with not-so-old plugins and newer versions of PyMOL? My very useful plugins, among which my dearest “PyVOL”, stopped working after I have upgraded from PyMOL 2.5.4. I’ve g

Re: [PyMOL] pymol plugins Problem

Hi Rituraj, To get a meaningful stack trace, import a plugin's module, e.g.: PyMOL> import pmg_tk.startup.align_all Not all plugins will add an entry to the "Plugin" menu, some just register new commands. Hope that helps. Cheers, Thomas On 19 May 2016, at 02:28, Rituraj Purohit wrote: >

[PyMOL] pymol plugins Problem

Hello, I am using pymol (1.6.x) in ubuntu 14.04, I install few plugins (Autodock, tconcoord and align_all) but none of them are displaying in plugin list. I am getting following error in pymol command screen. Please help me to rectify this error. . *.* *convert given font files to the PIL raste

Re: [PyMOL] [Pymol] plugins won't intitialize

Hi Yarrow, I assume you don't have the latest PyMOL version (1.5), which has improved plugin support and should not raise such an error. I don't know "movs.py" but it looks like it has not been written as a "plugin", but just a normal PyMOL/python script (again, PyMOL 1.5 will not make such a str

[PyMOL] [Pymol] plugins won't intitialize

Hello, Does anyone know why plugins wont initialize. I get the following message when trying to install movs.py into pymol1.5: Exception in plugin 'movs' -- Traceback follows... Traceback (most recent call last): File "/Applications/PyMOLX11Hybrid.app/pymol/modules/pmg_tk/PMGApp.py", line 320,

Re: [PyMOL] Questions about pymol plugins

ær Linnet >> Slotsvej 2 >> 4300 Holbæk >> Mobil: +45 60210234 >> >> >> >> 2011/11/24 James Starlight >> >>> Dear PyMol Users! >>> >>> I've decided to make this topic for all questions wich could be arrise >>&g

Re: [PyMOL] Questions about pymol plugins

rrise > during working in diffent PyMol plugins. > > So My first question about installation of the plugins wich are separate > python modules ( installed not via PyMolf itself) > > E.g I have old PyMol wicj lack CEalign plugin. I have CEalign source wich > then I succesfu

[PyMOL] Questions about pymol plugins

Dear PyMol Users! I've decided to make this topic for all questions wich could be arrise during working in diffent PyMol plugins. So My first question about installation of the plugins wich are separate python modules ( installed not via PyMolf itself) E.g I have old PyMol wicj lack CE

[PyMOL] Lucid Lynx Ubuntu 10.04 segmentation fault on Help-About Pymol : plugins dont work either

Hi I am using a subversion build of pymol built using setuptools i,e "python setup.py install" on 64 bit ubuntu Lucid Lynx 10.04. I can use the main program without any problems , but when I try to install and run the apbs plugin , pymol segmentation faults immediately. Incidentally , doing a Hel

Re: [PyMOL] plugins for MacPyMOL?

riday, January 30, 2009 6:45 AM To: pymol-users@lists.sourceforge.net Cc: Jon Latane Subject: [PyMOL] plugins for MacPyMOL? Hi, We have created a wizard that we would like to distribute, however a fair number of our users will be using the MacPyMOL version. It seems that the Plugin menu has

[PyMOL] plugins for MacPyMOL?

Hi, We have created a wizard that we would like to distribute, however a fair number of our users will be using the MacPyMOL version. It seems that the Plugin menu has been disabled as well as running scripts from the "file->run..." menu. Also plugin scripts dropped by hand into the modules/pmg_t

[PyMOL] Website with PyMOL plugins

Hello all, Due to the (unexpected) popularity of my plugin to color 2 backbones according to their RMSD (color_rmsd.py), I managed to have a working website of my lab from which you can download that plugins and other scripts I have coded. The site is: http://mrcc.ciq.uchile.cl/ and has a "soft

[PyMOL] Problems in using PyMol plugins

Dear all, I am trying to use PyMol plugins but I have some problems. In the reported case the Caver plugin was considered (following usage notes reported in http://loschmidt.chemi.muni.cz/caver/examples.php), for your information similar problems were encountered with builtin PyMol plugins (e.g

[PyMOL] Pymol plugins and DRM systems?

Has anyone looked into making pymol plugins work with any of the sundry distributed resource management systems (gridengine, lsf, pbs, condor, etc.)? I have a cluster that could make short work of a lot of computations that I want to visualize in pymol, but currently, that would mean installing

Re: [PyMOL] Plugins

Le Mardi 25 Octobre 2005 08:15, Tjaart de Beer a écrit : > Hi > > We are looking at possibly writing some plugins to extend the > functionality of PyMOL. How would we go about this? Is there some > documentation on the general process? > > Any help would be greatly appreciated!! Hi, Here is a use

[PyMOL] Plugins

Hi We are looking at possibly writing some plugins to extend the functionality of PyMOL. How would we go about this? Is there some documentation on the general process? Any help would be greatly appreciated!! -- Tjaart de Beer Bioinformatics and Computational Biology Unit University of Pret

[PyMOL] Plugins segfaults

Hi PyMOLers, We're having some mysterious troubles with PyMOL plugins that I hope someone can shed some light on. Out of the several linux boxes we have running PyMOL, a RedHat machine and a Debian machine play very nicely with plugins. Nothing ever complains and everything is smooth a