Re: [PyMOL] PLEASE HELP

Hi Kyle, The approach you listed looks about right to me. Using conda commands from the PyMOL commandline in the bundles don't seem to be working in those builds, but should be fine if you use another terminal. Either way, I will reach out to you directly. Best, Jarrett J. On Mon, Mar 27, 2023 a

Re: [PyMOL] PLEASE HELP

<https://aka.ms/o0ukef> From: Jarrett Johnson Sent: Monday, March 27, 2023 4:23:30 PM To: Kyle Moorman Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] PLEASE HELP EXTERNAL EMAIL : Exercise caution when responding, opening lin

[PyMOL] PLEASE HELP

To whom it may concern, While I am a licensed user of PyMol, h...@schrodinger.com has still not responded to me. I have some very technical installation questions which upon trying to solve on my own is only making the problem worse. Below is all the information I

Re: [PyMOL] Forced Linux/Python upgrade, killed PyMol, please help!

Hi John, On Wed, 2011-12-21 11:12 EST, John Ladasky wrote: > Hello everyone. It has been a while since I posted here. Apologies to > the admins, I tried to subscribe again, and I forgot that I was already > subscribed. > > For some non-PyMol work, I was obligated to upgrade my operating s

[PyMOL] Forced Linux/Python upgrade, killed PyMol, please help!

Hello everyone. It has been a while since I posted here. Apologies to the admins, I tried to subscribe again, and I forgot that I was already subscribed. For some non-PyMol work, I was obligated to upgrade my operating system to Ubuntu Linux 11.10. In fact, the specific reason that I had to

Re: [PyMOL] please help-how to generate dimer file from monomer file in pymol

Hi Rob, Jenna, Be aware that the symmetry data (symexp) need not be equal to the biological unit transformations (remark biomt), even though it will often match. And since I'm posting anyway, here's another possibility: load 1b8e.pdb, A create B,A alter_state 1,B,(x,y,z)=(-x,y,33.43-z) Cheers,

Re: [PyMOL] please help-how to generate dimer file from monomer file in pymol

Hello Jenna, On Tue, 06 Apr 2010 00:36:38 -0400 JiangJiang Liu wrote: > When I open the pdb file 1B8E (a homodimer protein) through > pymol I can only see a monomer shown in the screen. Now I know the > biological dimer is produced through crystallographic symmetry operations > in

Re: [PyMOL] please help-how to generate dimer file from monomer file in pymol

Jenna, Use PyMOL to download the biological unit: fetch 1b8e, type=pdb1 split the states out (you'll notice it's a two-state object) split_states 1b8e You can also create symmetry expansion via, A > Generate > Symmetry Mates > within X A, from your original object. Cheers, -- Jason On Tue,

[PyMOL] please help-how to generate dimer file from monomer file in pymol

Hello all, When I open the pdb file 1B8E (a homodimer protein) through pymol I can only see a monomer shown in the screen. Now I know the biological dimer is produced through crystallographic symmetry operations in pymol. To generate the dimer, I think I need to convert these

[PyMOL] Please help me!

Hi all, I have a ThinkPad T40p (WinXP) with an ATI Mobility Fire GL 9000 video driver. After installing PyMol, I try to run the executable but it crashes and I get the standard Windows error message asking me to submit an error report to Microsoft. I never got this error before on any PC I ran Py