Re: [PyMOL] New to PyMol. Want to extract sequence from .pse file w/ colors.

2012-02-27 Thread Thomas Holder
Hi Shane, I have a script which saves a colored sequence in HTML format. See attachment. Example usage: run save_colored_fasta.py save_colored_fasta seq.html It should be possible to copy&paste the colored sequence from your browser to excel. Cheers, Thomas Shane Neeley wrote,

Re: [PyMOL] New to PyMol. Want to extract sequence from .pse file w/ colors.

2012-02-26 Thread Shane Neeley
Hi Pymol Network, > > I would appreciate someones help in extracting the sequence in the viewer > above the protein. I have gone through the sequence and changed AAs to > different colors based on their position. I would ideally like to be able > to copy that sequence with the colors that they are