> To: Simon Holton
> Cc: noi...@uky.edu; acolasa...@gmail.com;
> pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] Ligand Surface Representation
>
>
> Hi Simon -
>
> I think I know what the problem is. Is your ligand composed
> of 'HETATM's?
> P
Hi Simon -
I think I know what the problem is. Is your ligand composed of 'HETATM's?
Pymol doesn't include HETATM records in calculating surfaces - this is
because most PDB files have waters etc. in them, and Warren wanted the user
to be able to load the PDB file and create a surface (for the pr
-Original Message-
From: Simon Holton
To: "Andrew Colasanti"
Date: Thu, 2 Nov 2006 15:36:55 +0100
Subject: Re: [PyMOL] Ligand Surface Representation
Maybe it wasn't clear from my original email, but I did try making a
new object for the ligand and one for the 'empt
can you get a surface for the protein-ligand complex?
cheers,
nick
-Original Message-
From: Simon Holton
To: "Andrew Colasanti"
Date: Thu, 2 Nov 2006 15:36:55 +0100
Subject: Re: [PyMOL] Ligand Surface Representation
Maybe it wasn't clear from my original email
Maybe it wasn't clear from my original email, but I did try making a
new object for the ligand and one for the 'empty' protein, but this
doesn't help :-(
Simon
On Nov 2, 2006, at 3:19 PM, Andrew Colasanti wrote:
Did you create a new object for the ligand? Try creating 2 objects,
one fo
eated, probably called
obj01. you should be able to show the surface for this object now.
hope this helps. best of luck!
cheers,
nick
-Original Message-
From: "Andrew Colasanti"
To: pymolbb
Date: Thu, 2 Nov 2006 09:19:04 -0500
Subject: Re: [PyMOL] Ligand Surface Represen
Did you create a new object for the ligand? Try creating 2 objects,
one for ligand and one for protein w/o ligand.
Andrew
On 11/2/06, Simon Holton wrote:
Hi Folks,
I'm trying to generate a surface for a ligand which is part of a
ligand-protein complex. I realise this is the other w
Hi Folks,
I'm trying to generate a surface for a ligand which is part of a
ligand-protein complex. I realise this is the other way around to
normal, but somehow when I select the ligand in pymol and then 'show
surface, ligand', absolutely nothing happens. No error, but no
surface. The
