Re: [PyMOL] Help with autodock plugin for PyMOL

2012-10-27 Thread Troels Emtekær Linnet
What is the atom name of EFP.ligand:A:EFP999? Can you check your pdb file? Do you rename them before running the plugin? Den 26/10/2012 23.26 skrev "Ragnar Thomsen" : > I have a problem when running the autodock plugin for PyMOL. I followed the > tutorial at http://www.pymolwiki.org/index.php/Auto

[PyMOL] Help with autodock plugin for PyMOL

2012-10-26 Thread Ragnar Thomsen
I have a problem when running the autodock plugin for PyMOL. I followed the tutorial at http://www.pymolwiki.org/index.php/Autodock_plugin. When I prepare the ligand I get the following error output: Batch: /usr/lib/python2.7/site- packages/MGLToolsPckgs/AutoDockTools/Utilities24/prepare_ligand4.