Re: [PyMOL] Help with alignments/ more general create and align question

2012-12-11 Thread Mike Marchywka
with existing tools. Thanks. > From: jason.vertr...@schrodinger.com > Date: Tue, 11 Dec 2012 07:38:32 -0600 > To: jonat...@strubi.ox.ac.uk > CC: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] Help with alignments > > Hi Jo

Re: [PyMOL] Help with alignments

2012-12-11 Thread Jason Vertrees
Hi Jon, align prot1 and chain A, prot2 and chain X 'super' and 'cealign' should work similarly. Cheers, -- Jason On Tue, Dec 11, 2012 at 7:35 AM, Jonathan Grimes wrote: > > I am wanting to align proteins based on superposition of > particular chains. Is it possible to do the superposition

[PyMOL] Help with alignments

2012-12-11 Thread Jonathan Grimes
I am wanting to align proteins based on superposition of particular chains. Is it possible to do the superposition based on the chains, but to move, in this case the entire complex ??? Thanks Jon Sent from my iPad -