Re: [PyMOL] Generating peptides with structure in Pymol

2011-08-11 Thread Jason Vertrees
Hi Joel, That looks like it needs correcting. Please post this on the open-source tracker (http://sourceforge.net/tracker/?group_id=4546). I'll update the case there when it's fixed. Cheers, -- Jason On Wed, Aug 10, 2011 at 11:49 PM, Joel Tyndall wrote: > Hi all, > > > > I just wanted to raise

[PyMOL] Generating peptides with structure in Pymol

2011-08-10 Thread Joel Tyndall
Hi all, I just wanted to raise an issue a colleague pointed out recently. When you generate an ideal peptide in the form of an alpha helix using the builder function in Pymol, the intra-molecular H-bonds that characterise an alpha helix (I to i+4) are too close (2.2 Angstrom O-N). If you genera