Re: [PyMOL] Finding distances along molecular tunnels

2012-04-03 Thread Thomas Holder
Hi Sajeewa, > [...] > If I follow wizard --> measurements --> distance it asks for atoms to > click on, but as the tunnels are empty space when I click on the > starting points of the tunnels nothing is recognized. > What would be the most accurate way of measuring the above two distances? The tu

[PyMOL] Finding distances along molecular tunnels

2012-04-02 Thread Sajeewa Pemasinghe
Hello everyone, I have 2 molecular tunnels inside one protein corresponding to two starting points, created by the CAVER plugin. The two tunnels join to form one common tunnel. I want to measure 1) The distance between the two starting points of the tunnels 2) The distance from each starting po