Works for me with PyMOL 3.1.6 and Open-Source PyMOL 3.2.0a when
deleting the bonds with the "unbond" command.
fetch 4WMZ
as licorice
zoom elem FE
unbond elem FE, *
System info:
Arch Linux
NVIDIA GeForce GTX 1070/PCIe/SSE2
4.6.0 NVIDIA 575.64.05
PyQt5 5.15.11 (Qt 5.15.15)
Cheers,
Thomas
On Thu
Hi,
Indeed I could not show the iron as nb_spheres but I managed to use
spheres instead.
fetch 4WMZ
as spheres, elem FE
set sphere_scale, 0.4, elem FE
(I am using the open-source version of PyMOL 3.1.0 installed using brew)
Best regards,
Takanori Nakane
On 2025/07/31 12:47, Joel Tyndall via
Hi All,
I’m trying to make a pretty picture of a protein containing a heme and ligand.
Previously I could delete the bonds (using builderthat pymol shows for
coordination as I prefer to not show them as stick form and then “show
nb_sphere” to show the metal ion. I can no longer do this (Fe doe
