Re: [PyMOL] Error running Contact Map Visualizer Plugin

2012-03-21 Thread Suhaila Haji Mohd Hussin
Oh, please nevermind. I've already got it sorted. Thank you. Suhaila Date: Wed, 21 Mar 2012 06:31:40 +0100 Subject: Re: [PyMOL] Error running Contact Map Visualizer Plugin From: tsje...@gmail.com To: bell_beaut...@hotmail.com CC: pymol-users@lists.sourceforge.net Hi Suheila, What were the

Re: [PyMOL] Error running Contact Map Visualizer Plugin

2012-03-20 Thread Tsjerk Wassenaar
Hi Suheila, What were the exact commands you used, and what error did it come up with? Just saying you tried mogrify and convert and the error was still there isn't very informative to us. Cheers, Tsjerk On Mar 18, 2012 2:39 PM, "Suhaila Haji Mohd Hussin" < bell_beaut...@hotmail.com> wrote: I

[PyMOL] Error running Contact Map Visualizer Plugin

2012-03-18 Thread Suhaila Haji Mohd Hussin
I already got few replies regarding this issue but I still haven't solved and I don't even have the slightest idea what's causing it. I tried mogrify, convert using ImageMagick, none of them works still giving me the following errors when after loading contact map & pdb file onContact Map Visua

Re: [PyMOL] Error running Contact Map Visualizer Plugin

2012-03-13 Thread Thomas Holder
otmail.com > > CC: tsje...@gmail.com; pymol-users@lists.sourceforge.net > > Subject: Re: [PyMOL] Error running Contact Map Visualizer Plugin > > > > On 03/13/2012 02:43 PM, Suhaila Haji Mohd Hussin wrote: > > > I tried that just now, the error is still the sam

Re: [PyMOL] Error running Contact Map Visualizer Plugin

2012-03-13 Thread Suhaila Haji Mohd Hussin
gt; Subject: Re: [PyMOL] Error running Contact Map Visualizer Plugin > > On 03/13/2012 02:43 PM, Suhaila Haji Mohd Hussin wrote: > > I tried that just now, the error is still the same :( > > > > Perhaps you're right about Gromacs XMP files aren't properly process

Re: [PyMOL] Error running Contact Map Visualizer Plugin

2012-03-13 Thread Thomas Holder
On 03/13/2012 02:43 PM, Suhaila Haji Mohd Hussin wrote: > I tried that just now, the error is still the same :( > > Perhaps you're right about Gromacs XMP files aren't properly processed > by ImageMagick. it worked for me with: convert contact-map.xpm contact-map.png Cheers, Thomas -- Thoma

Re: [PyMOL] Error running Contact Map Visualizer Plugin

2012-03-13 Thread Suhaila Haji Mohd Hussin
> following commands: > > > > mogrify -format jpg *.xpm > > > > or > > > > mogrify -format png *.xpm > > > > Cheers, > > Suhaila > > > >> Date: Tue, 13 Mar 2012 14:01:21 +0100 > >> Subject: Re: [PyMOL] Error running Cont

Re: [PyMOL] Error running Contact Map Visualizer Plugin

2012-03-13 Thread Tsjerk Wassenaar
ed ImageMagick to convert it and run the > following commands: > > mogrify -format jpg *.xpm > > or > > mogrify -format png *.xpm > > Cheers, > Suhaila > >> Date: Tue, 13 Mar 2012 14:01:21 +0100 >> Subject: Re: [PyMOL] Error running Contact Map

Re: [PyMOL] Error running Contact Map Visualizer Plugin

2012-03-13 Thread Tsjerk Wassenaar
Hi Suhaila, It looks like it's trying to load the XPM file, in stead of the jpg/png. How did you invoke Pymol and what commands did you give? Cheers, Tsjerk On Tue, Mar 13, 2012 at 1:49 PM, Suhaila Haji Mohd Hussin wrote: > Hello everyone especially to people who have used Contact Map Visualiz

[PyMOL] Error running Contact Map Visualizer Plugin

2012-03-13 Thread Suhaila Haji Mohd Hussin
Hello everyone especially to people who have used Contact Map Visualizer plugin before. Please refer the link below for more details of the issue:http://www.pymolwiki.org/index.php/Contact_map_visualizer In that link I managed to generate the contact map successfully and converted the fo