al
energy minimum.
Cheers,
Warren
From: Michael Lerner [mailto:mglerner+sourcefo...@gmail.com]
Sent: Friday, September 04, 2009 6:15 AM
To: a...@artforscience.com
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Creating a single PDB
OTE: Ctrl-Z will actually undo conformational changes (ignore the Undo
button for now).
> -Original Message-
> From: Mark Benson [mailto:m...@ufl.edu]
> Sent: Thursday, September 03, 2009 8:57 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Creating a single PD
I definitely remember some mode where PyMOL would show good/bad contacts
with red/green dots, but I can't seem to figure it out now. It was in
Warren's talk as he was manually docking in a ligand. I searched, but
couldn't figure it out myself. Does anyone know how to put PyMOL into that
mode?
Chee
Bring up both pdb files in one session,
orient the ligand by going to editing mode and using the shift key with
the left mouse button (3 button mouse mode) to move just the ligand.
Once you have it in the position you want,
type select all in the command line and then hit enter,
In the A menu for
Dear All,
I am trying to build a single PDB file from two different PDB
files. One PDB has a small organic ligand, and the second PDB
contains amino acid side chains from an active site.
I load both PDB files, but I want to "freeze" the orientation of
the amino acid side chains PDB ( not move
