Thanks Tsjerk!
now the map is accepted fine by the Pymol- however there is an problem
due to the mismatching of atoms in ref structure and the map (although
I use ref.pdf from which contact map has been produced). Probably the
source of the error is Martini's atom representation used in my system
Hi James,
You can convert the .xpm file to .png/.jpg using tools like convert
(imagemagick) and Gimp. Convert doesn't always get the Gromacs .xpm right,
but it's an easy one to try.
Cheers,
Tsjerk
On May 11, 2016 2:40 PM, "James Starlight" wrote:
> Dear Pymol users!
>
> I am in charge with the
Dear Pymol users!
I am in charge with the analysis of protein-protein association during
long molecular dynamic simulation. In particularly I am interesting to
find residues on one of the protein which are crustal for the binding
interface established during Md.
For that purpose I am trying to use
