Re: [PyMOL] Comparing B-factors of aligned residues

2009-07-12 Thread Donnie Berkholz
On 15:51 Sun 12 Jul , Warren DeLano wrote: > Donnie, > > Please try: > > > load $TUT/1hpv.pdb > > extract chA, chain A > > extract chB, chain B > > # assign some B values onto chA > > from random import random > > alter chACA, b=random() > > # show for later comparison... > > iter

Re: [PyMOL] Comparing B-factors of aligned residues

2009-07-12 Thread Warren DeLano
eforge.net Subject: Re: [PyMOL] Comparing B-factors of aligned residues On 10:11 Sun 12 Jul , Jason Vertrees wrote: > Donnie Berkholz wrote: > > I'm trying to compare the B-factors in two homologous proteins I > > aligned using 'super'. I can create an alignment

Re: [PyMOL] Comparing B-factors of aligned residues

2009-07-12 Thread Donnie Berkholz
On 10:11 Sun 12 Jul , Jason Vertrees wrote: > Donnie Berkholz wrote: > > I'm trying to compare the B-factors in two homologous proteins I > > aligned using 'super'. I can create an alignment object mapping > > residue pairs together, so I think what I want to do should be > > possible. I'd l

[PyMOL] Comparing B-factors of aligned residues

2009-07-11 Thread Donnie Berkholz
Hi all, I'm trying to compare the B-factors in two homologous proteins I aligned using 'super'. I can create an alignment object mapping residue pairs together, so I think what I want to do should be possible. I'd like to somehow use that to map the *difference* between the two CA B's onto one