RE: [PyMOL] Coloring gradient

2004-11-03 Thread Peter Teriete
0)-872-0834 Fax:(650)-872-0273 Cell:(650)-346-1154 > -Original Message- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Charles Moad > Sent: Tuesday, November 02, 2004 11:26 AM > To: Peter Teriete; pymol-users

RE: [PyMOL] Coloring gradient

2004-11-02 Thread Warren DeLano
t; To: Peter Teriete; pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] Coloring gradient > > I think I can help you except for one part. In short you > want the 'spectrum' command. For example, you can color a > chain R, based on the b-factor with the command: > >

Re: [PyMOL] Coloring gradient

2004-11-02 Thread Douglas Kojetin
Will this work for what you want to do? spectrum palette=green_yellow Dear All, I'm trying to color a protein cartoon structure from N- to C-terminal with a green to yellow gradient. Had a browse around and couldn't quite find the correct command. Any pointers are welcomed. Peter

Re: [PyMOL] Coloring gradient

2004-11-02 Thread Charles Moad
I think I can help you except for one part. In short you want the 'spectrum' command. For example, you can color a chain R, based on the b-factor with the command: spectrum b, green_yellow, chain R The problem is that you must color based on a numeric value that each atom has associated. S

[PyMOL] Coloring gradient

2004-11-02 Thread Peter Teriete
Dear All, I'm trying to color a protein cartoon structure from N- to C-terminal with a green to yellow gradient. Had a browse around and couldn't quite find the correct command. Any pointers are welcomed. Peter -- Dr Peter Teriete Laboratory of Molecular Biophysics Department of Biochemistry Un