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> -Original Message-
> From: Mark Bostock [mailto:mjb...@cam.ac.uk]
> Sent: Saturday, 10 December 2011 10:26 a.m.
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Changing ligand conformatio
/ Waeawhakaahua +64 3 4797034
-Original Message-
From: Mark Bostock [mailto:mjb...@cam.ac.uk]
Sent: Saturday, 10 December 2011 10:26 a.m.
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Changing ligand conformation
I have a pdb file of a protein which contains a lysine residue bound to
Hi Mark,
It sounds like you have a couple options. First, you could use PyMOL's
builder (http://www.pymolwiki.org/index.php/Builder; the page needs
updating) to do the trans->cis conversion yourself, by hand. Second,
if you already have the cis structure coordinates, you could issue the
"update" c
I have a pdb file of a protein which contains a lysine residue bound to
a ligand. The ligand has two conformations due to a cis/trans
isomerisation. I have created a pdb file (also .mol and .mol2) of lysine
attached to the cis form and would like to replace the
lysine-ligand(trans) form which i
