Re: [PyMOL] CONECT table

2014-10-09 Thread Markus Heller
Thanks, works beautifully! Just FYI, it's not my structure, I was tasked with making a few pretty pictures, that's all :) Markus From: Engin Özkan [mailto:eoz...@uchicago.edu] Sent: Tuesday, October 07, 2014 7:35 PM To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] CONECT ta

Re: [PyMOL] CONECT table

2014-10-09 Thread Markus Heller
@lists.sourceforge.net Subject: Re: [PyMOL] CONECT table Hi, It appears that the following: Select gluco, bound_to resn NDG Show sticks, gluco does not work. I'm not sure if the glycosylation is handled as a separate residue, but you could try: select glucoasp, byres (neighbor (resn NDG)) show s

Re: [PyMOL] CONECT table

2014-10-07 Thread Engin Özkan
cks, gluco But that doesn't work, shows no side chains. Any help much appreciated! Thanks and Cheers Markus -Original Message- From: David Hall [mailto:li...@cowsandmilk.net] Sent: Monday, October 06, 2014 4:40 PM To: Markus Heller Cc: pymol-users@lists.sourceforge.net Subject: Re: [

Re: [PyMOL] CONECT table

2014-10-07 Thread Andreas Warnecke
gt;> This only shows me the glycoside, but NOT the side chain it's attached to. >> >> I tried >> >> Select gluco, bound_to resn NDG >> Show sticks, gluco >> >> But that doesn't work, shows no side chains. >> >> Any help much appreciated!

Re: [PyMOL] CONECT table

2014-10-07 Thread Andreas Warnecke
kus > > -Original Message- > From: David Hall [mailto:li...@cowsandmilk.net] > Sent: Monday, October 06, 2014 4:40 PM > To: Markus Heller > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] CONECT table > > http://www.pymolwiki.org/index.php/Connect_mode &g

Re: [PyMOL] CONECT table

2014-10-07 Thread Markus Heller
ks and Cheers Markus -Original Message- From: David Hall [mailto:li...@cowsandmilk.net] Sent: Monday, October 06, 2014 4:40 PM To: Markus Heller Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] CONECT table http://www.pymolwiki.org/index.php/Connect_mode -David > On Oct 6, 2014, at

Re: [PyMOL] CONECT table

2014-10-06 Thread David Hall
http://www.pymolwiki.org/index.php/Connect_mode -David > On Oct 6, 2014, at 6:35 PM, Markus Heller wrote: > > Hello, > > How can I get PYMOL to use the CONECT table from a PDB file? My protein is > glycosylated, and I'd like to properly and automatically display the > glycosides including t

[PyMOL] CONECT table

2014-10-06 Thread Markus Heller
Hello, How can I get PYMOL to use the CONECT table from a PDB file? My protein is glycosylated, and I'd like to properly and automatically display the glycosides including their linkage to the protein. Thanks and Cheers Markus -- Markus Heller, Ph.D. NMR Scientist CDRD - The Centre for Drug