Re: [PyMOL] A couple of quick PyMOL + APBS notes

2004-07-16 Thread Marc Saric
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 ~ wrote: | 1) Does APBS take a lot of memory? | | APBS can certainly take a lot of memory. In addition, my plugin sets up a | grid that's a little finer than the APBS default (more grid points == | better calculation, but more memory). You can poi

Re: [PyMOL] A couple of quick PyMOL + APBS notes

2004-07-15 Thread Douglas Kojetin
Verified. I downloaded the g77 available from http://hpc.sourceforge.net, copied the files to the respective directories in /usr/local/, and the binary appears to work now (at least no errors when I run it with no input as before). Thanks! Doug On Jul 15, 2004, at 8:02 PM, Jianghai Zhu wrot

Re: [PyMOL] A couple of quick PyMOL + APBS notes

2004-07-15 Thread James Stevens
I get this tooall very depressing..enough to put one off Unix for good..just joking. J Dr. James Stevens Senior Research Associate Department of Molecular Biology - BCC206 The Scripps Research Institute 10550 North Torrey Pines Road La Jolla CA

Re: [PyMOL] A couple of quick PyMOL + APBS notes

2004-07-15 Thread Jianghai Zhu
The reason it doesn't work is because, I think, APBS was not compiled by the fink g77. More likely it was compiled by a g77 from http://hpc.sourceforge.net/ or other similar places. So you need to install that version of g77 to get APBS running on you mac. If anybody can compiled APBS using fi

Re: [PyMOL] A couple of quick PyMOL + APBS notes

2004-07-15 Thread Douglas Kojetin
(this might be better suited on an APBS list, but i figured i'd give it a shot here) I downloaded the Mac APBS binary, but I'm seeing this error when trying to run it: % ./apbs-0.3.1-g4 dyld: ./apbs-0.3.1-g4 can't open library: /usr/local/lib/libg2c.0.dylib (No such file or directory, errno

[PyMOL] A couple of quick PyMOL + APBS notes

2004-07-15 Thread Michael George Lerner
Hi all, I've been getting two questions about APBS from a few people, so I thought I'd send the answers here: 1) Does APBS take a lot of memory? APBS can certainly take a lot of memory. In addition, my plugin sets up a grid that's a little finer than the APBS default (more grid points == better