Hi Martin,
I don't think there's a fix for this. Please file a bug report on the
open-source tracker.
Cheers,
-- Jason
On Mon, Apr 30, 2012 at 10:09 AM, Martin Hediger wrote:
> Dear Pymol users
> We are trying to generate a number of mutated structures using the
> mutagenesis wizard. However,
Dear Pymol users
We are trying to generate a number of mutated structures using the
mutagenesis wizard. However, after mutating a position and saving to a
new PDB file, the mutated residue ends up being "mixed" into the
coordinate lines of the first residue. Some two coordinate lines are
separa
hey,
just wanted to ask if you could find something on why the mutagenesis
wizard is destroying the ordering of atoms?
Is this perhaps fixed in the latest versions? Then a download would make
sense.
Thanks, Martin
Am 13.12.10 16:52, schrieb Jason Vertrees:
> Hi Martin,
>
> As you've found,
Hi Martin,
As you've found, the mutagenesis wizard destroys the ordering in some
cases. I'll look into it.
Cheers,
-- Jason
On Tue, Dec 7, 2010 at 11:34 AM, Martin Hediger wrote:
> Good day
> I use PyMOL to introduce mutations into a structure. It occured to me that
> when saving the modified
Good day
I use PyMOL to introduce mutations into a structure. It occured to me
that when saving the modified structure, atom sequence was not
preserved. Using
set retain_order
set pdb_retain_ids
is supposed to control this. It seems now, as if mutating a structure
does a really weired thing:
O
Hi Martin,
set retain_order
set pdb_retain_ids
Cheers,
-- Jason
On Tue, Nov 9, 2010 at 4:30 AM, Martin Hediger wrote:
> Dear all
> It occured to me that PyMOL is resequencing a structure when saving. I
> am trying to interpolate between two structures where it is critical to
> have identical s
Dear all
It occured to me that PyMOL is resequencing a structure when saving. I
am trying to interpolate between two structures where it is critical to
have identical sequence in both structures. Is it possible submit a
-option to the save command?
Thanks for your help
Martin
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