Hi Osvaldo,
Thank you for your suggestion! Today I tried the APBS again and it works
this time. Just right after reading your email, I think I've figured out
what the problem is. I think the molecule must be in the same location for
both calculation and rendering. I guess last time, I used differe
Hi Victor,
You should never use the build-in "generate vacuum electrostatic potential"
function for any real analysis. The theoretically correct approach is to
use the Poisson-Boltzman equation (as implemented for example in the APBS
plugin). Other approaches like generalized Born models or SASA m
Dear All,
First, I am trying to compare surface electrostatic potential among several
members from a protein family. I was able to use build-in function in pymol
(generate vacuum electrostatic potential). However, the range of potential
for each molecule is automatically set up and they are differ
