Hi lina:
After you reached the mutagenisis wizzard, click on the amino acid you
wish to mutate. To subsitute another amino acid, click on "no mutation" icon
in the wizzard. then you can see all the other aminoacid appearing. From the
list click the one you wish to include and say ok. Jobs do
hello all:
any abalone users
-- Forwarded message --
From: mohan raj
Date: Wed, Jun 2, 2010 at 11:41 AM
Subject: abalone
To: PyMOL-users@lists.sourceforge.net
hi all:
i have came across the sowftware "abalone" for molecular simulations,
hi all:
i have came across the sowftware "abalone" for molecular simulations,
where they have mentioned we can do simulations of proetin molecule by
stating specific force fields and at specified temperature.
could i create mutations in pymol and open the same file in abalone??
how useful
hi all:
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; Hope it helps,
>
> Tsjerk
>
> Of course neither way would restrict you to plotting...
>
>
>
> On Mon, Mar 22, 2010 at 1:38 PM, mohan raj
wrote:
>> hi all:
>>
>> could any one tell me how to get the coordinates for a specific atom
in
>
hi all:
could any one tell me how to get the coordinates for a specific atom in
a particular amino acid using pymol commands
is their a commant with can list the coordinates for each aminoacid in
a protein molecule?? \
kindly clarify, thanking you in advance.
- mohan
---
Dear All:
i am new to pymol. i dont know how the coordinates are made in pdb file.
cold someone tell me? how do we arrive at the coordinates from crystal
structure.
cold we change the coordinated of the existing pdb file?
also cold any one tell me how to introduce a substrate? eg when i am view
hi all:
i am a new to pymol. could some one tell me more about the programs
involved in ligand interaction.
could i do protein protein interaction simulateions using pymol???
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