Re: [PyMOL] Clashes cut off

2012-05-21 Thread doranhen
Hi Thomas, Thank you for your reply. I tried running the show_bumps.py script I copied from PymolWiki using @,however pymol gives me the following error : NameError: name 'show_bumps' is not defined How can I define it? Also, do you know what are the values that sculpt_vdw_vis_max, mid and min

[PyMOL] Clashes cut off

2012-05-20 Thread doranhen
Hi, I want to make pymol show me clashes between residues vdw spheres only if the clashes are above a certain clash cut off, say if the clashing residues overlap by x square angstrom than its o.k, but if they overlap by more then x it's should show as a clash. Does anyone know of a way to do