[PyMOL] angle between the loops

Hi Is there any script that can measure the angle between the loop and or can define plane on the loop?? best Jiri -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http

[PyMOL] stride does not work

Hi Pymol users I am using the DSSP and stride pymol plugin and I am able to use the dssp-2.0.4-win32exe fpr the DSSP from this site ftp://ftp.cmbi.ru.nl/pub/ molbio/software/dssp-2 but somehow not able to make stride working...Is there any stride exe?? or some way to use the stride in the pymol plu

[PyMOL] making a plane

Hi I am analyzing the dynamics of the loop and interested to define the loop as plane. Is there is a way in the pymol, if I can define the loop as plane and can measure the angle between these plane in different model?? Best J. Vitali ---

[PyMOL] aligned and cealign command

Hi Pymol user I have a heterodimer protein and I wanted to compare it with homologous structures. The chain B of both the structures can be align with align command and in doing so, the chain A is misaligned and which can be only align by the cealign command. The sequence similarity between chain A