[PyMOL] selection coloring in ribbon

Hello All, I just updated Pymol from 1.8.0 to the latest 1.8.4. But I noticed when the structure is rendered in ribbon and you try to color part of it, the behavior changed at the boundaries. Instead of beginning and ending at the middle of the bonds like before, now the colors start and end at

Re: [PyMOL] difficulty opening EmrE protein (pdb: 3B5D) in Pymol

Hi Mohsen, The PDB file of 3B5D only contains CA atoms, so most rendering like cartoon fails. You could try to visualize it by "set ribbon_trace_atoms, 1" and then show it as ribbon. Yuxing -Original Message- From: pymol-users-requ...@lists.sourceforge.net [mailto:pymol-users-requ...@

[PyMOL] Low resolution surface of large structures

n, 10 PyMOL>map_new map, gaussian, 10, 3j3y, 10 ObjectMap: Map created. ObjectMap: Computing Gaussian map for 2116800 atom positions. Executive: object "map" created. PyMOL>isosurface surf, map, 1 Any ideas? It is run in Pymol 1.7.4.0 on a computer with Windows 7 and 4GB memory. Tha