hen I'll have a look.
>
> Cheers,
> Thomas
>
> On Oct 22, 2013, at 5:52 AM, Yotam Avital wrote:
>
> > Hi Thomas.
> >
> > Thanks for the quick replay. I installed the svn version of pymol with
> the same result. I know that 6000 atoms isn't much for this tas
wiki.org/index.php/Linux_Install
>
> Cheers,
> Thomas
>
> On Oct 21, 2013, at 4:58 PM, Yotam Avital wrote:
> > Hi.
> >
> > I have python (1.4) on a xubuntu 12.04 machine (fresh install). The
> machine has 6GB ram and an intel i3 processor (I don't remember the
Hi.
I have python (1.4) on a xubuntu 12.04 machine (fresh install). The machine
has 6GB ram and an intel i3 processor (I don't remember the exact model).
On a previous install of Ubuntu (13.04) I had no trouble viewing files of
that size, but now I can't. I get the "standard" EEK! pymol just run o
Hi.
I'm sorry I didn't respond earlier. I wasn't well.
Thank you for all of your replays. Jeff Van Voorst's solution was the one I
was looking for.
Again. Thank and sorry
Yotam
On Mon, Jun 18, 2012 at 6:00 PM, Jeffrey Van Voorst wrote:
> Hello Yotam,
>
> You can place the commands you would o
I may have asked this question before but I can't find the solution
anywhere.
I have several (30) files of the same type I want to examine. On each file
I need to run about ten commands. Is there a way to do this automatically?
The commands I want to run are:
show spheres
color (red/blue/green)
h
Hi
I have a series of xyz files:
3000
mem
type1 x1 y1 z1 id1
type2 x2 y2 z2 id2
.
.
.
where type is the type of the atom, x, y, and z are the
coordinates and id is some tracking id I use.
I want to generate a movie (no matter if it is a fixed angle or free to
rotate). Is there a
Great, thank you.
On Mon, Sep 12, 2011 at 10:05 AM, Thomas Holder <
spel...@users.sourceforge.net> wrote:
> Hi Yotam,
>
>
> I'm sorry but this is too complected. Currently, I can't afford the time
>> to learn another scripting languish. Consider gnuplot script files, which
>> are simply a list
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> 04107 Leipzig, Tyskland
> Mobil: +49 1577-8944752
>
>
>
> 2011/9/11 Yotam Avital
>
>> Hi.
>>
>> How hard it is to write a (python?) script that will rotate the figure and
>> color some atoms? Nothin
Hi.
How hard it is to write a (python?) script that will rotate the figure and
color some atoms? Nothing fancy... I searched a little bit but couldn't find
a quick and dirty tutorial for script writing.
Thanks
--
My other email account has a "professional" signature.
---
raße 53, 2 RE <http://maps.google.dk/>
> 04107 Leipzig, Tyskland
> Mobil: +49 1577-8944752
>
>
>
> 2011/8/22 Yotam Avital
>
>> The xyz <http://en.wikipedia.org/wiki/XYZ_file_format> file format
>> opens easily with pymol (pymol fileName.xyz). I can find
;
> Troels Emtekær Linnet
> Karl-Liebknecht-Straße 53, 2 RE <http://maps.google.dk/>
> 04107 Leipzig, Tyskland
> Mobil: +49 1577-8944752
>
>
>
> 2011/8/22 Yotam Avital
>
>> Hi.
>>
>> I have a xyz file in the following form:
>>
>> C
Hi.
I have a xyz file in the following form:
C0 0 0
O0 0 1
O0 0 2
C0 0 6
O0 0 5
O0 0 4
.
.
.
How can I select an atom from the list? How can I measure an atom from that
list?
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