[PyMOL] set_dihedral

4 consecutive residues. Is there any restriction on where you can apply this command? Thanks in advance, xavi -- Xavier Deupi, Ph.D. Department of Molecular and Cellular Physiology Beckman Center for Molecular and Genetic Medicine (B161) 279 Campus Drive, Stanford University School of Medici

[PyMOL] direction of rotation

can reproduce this 'bug' changing the conformation of some other residue... So, has anybody experienced this situation before? Any solution to restore the 'normal' behaviour of the 'mutated' conformations? Is it possible that this is a bug? Regards, Xavier -- Xav

[PyMOL] using a variable name within a selection

on't match (0 != 6). ... which seems a pretty straightforward error message. I've tried different 'alternative syntaxes', but I can't get the correct form. Any help? Thanks in advance xavi -- Xavier Deupi, Ph.D. Department of Molecular and Cellular Physiology Beckman Cen

Re: [PyMOL] mouse middle button

__ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users -- Xavier Deupi, Ph.D. Department of Molecular and Cellular Physiology Beckman Center for Molecular and Genetic Medicine (B161) 279 Campus Drive, S

[PyMOL] torsion + movie

command (as in "load foo1.pdb,mov") expects a pdb file as an argument, but I want to load the current state as shown in PyMOL (after modifying the torsion angle, for instance). Any help? Thanks in advance, Xavier -- Xavier Deupi, Ph.D. Department of Molecular and Cellular Physiology

[PyMOL] conformational states in the mutagenesis wizard

X 10.4.2) Thanks in advance, Xavier -- Xavier Deupi, Ph.D. Department of Molecular and Cellular Physiology Beckman Center for Molecular and Genetic Medicine (B161) 279 Campus Drive, Stanford University School of Medicine Stanford, CA 94305 (USA) E-mail: xavier.de...@stanford.edu Phone: +1 (65

[PyMOL] transparent sticks

selection "ret", as I was expecting. I've been trying a few variations in the syntax, but I can't figure out the correct way... any help? Thanks in advance, Xavier -- Xavier Deupi, Ph.D. Department of Molecular and Cellular Physiology Beckman Center for Molecular and Genet

[PyMOL] movies in MacOSX

Thanks everybody. Framed (<http://www.likelysoft.com/framed/>) works fine. x -- Xavier Deupi, Ph.D. Department of Molecular and Cellular Physiology Beckman Center for Molecular and Genetic Medicine (B161) 279 Campus Drive, Stanford University School of Medicine Stanford, CA 94305 (USA)

[PyMOL] movies in MacOSX

#x27;t find the mpng codec. I downloaded a codecs.conf file and copied to ~/.mplayer, but it doesn't help. Are any of you using mencoder in a mac? If so, I'd like to get some advice. Thanks in advance, Xavier -- Xavier Deupi, Ph.D. Department of Molecular and Cellular Physiology Bec

[PyMOL] atom number labels?

Hi, I'm a new user, so my question is *extremely* basic... I want to display atom numbers as labels, but this property does not appear in the list of properties that can be displayed using the command 'label'. How can I do it? Thanks in advance, xavi -- Xavier Deupi, Ph.D