On Wed, 4 Sep 2002, Timothy Moore wrote:
> I don't know whether this has been covered before but I have some
> questions on clipping whilst using surfaces. Before I go on I will state
> that pymol produces the best surfaces for my purposes, of any program I
> have seen so far. However, (sorry ther
On Mon, 2 Sep 2002 nksau...@lbl.gov wrote:
> An appropriate U.S. Labor Day announcement as we remember the hard work
> Warren has put into PyMOL.
Thanks! and there still quite a lot to do...
...such as pushing out a new native Mac OSX beta release:
Version 0.84beta is a follow-on to the limited
Dear PyMOL Users around the Globe:
Folks, I have made a tough decision. Like many of you, I believe
that PyMOL has the potential to become an effective software tool for
bioinformatics, structural biology, computational chemistry,
cheminformatics, and Science education. However, by myself, wo
On Fri, 16 Aug 2002, Bartholomeus Kuettner wrote:
> Dear all!
>
> I've encountered several questions while playing aroung with PyMOL. Maybe
> there is someone who could provide some help?
>
> 1. dash options
>
> It seems that all the "dash" settings (e.g. "dash_length", "dash_with",
> "dash_radius
On Sat, 17 Aug 2002, Bartholomeus Kuettner wrote:
> Hello there!
>
> I followed mailing list instructions to create cgo based labels via a python
> script. Unfortunately, the labels are not in plane but more like
> perpendicular. So is there a way to alter the orientation of such cgo
> labels. I t
On 19 Aug 2002, Gareth Stockwell wrote:
>
> Dear PyMOL users,
>
> Does anybody know of a way to either
>
> i) Change the radius of a specified atom, or
alter (atom selection), vdw=radius
for example
alter (name ca),vdw=5
> ii) Make a CGO sphere semi-transparent?
Currently impossibleg (trans
On Tue, 20 Aug 2002, Peter C. McCluskey wrote:
> >The other thing I'd find useful is some molecular mechanics tools,
> >particularly energy minimization. Blending PyMOL with MMTK seems like a
> >good way to do this, since MMTK's license looks fairly liberal.
I think we're all of the same mind on
