Dear all,
I've written a .pml script to render volumes and save png files. The script
works fine when running it from the GUI, but for some reason when I run in
command line mode with pymol -cqr myscript.pml the image saved is blank.
It appears that when running from the command line it automatic
CA), (1ra1 and name CA)
> rms (1rx1 and name CA), (1ra1 and name CA)
>
> Cheers,
>
> -Michael
>
>
> On Fri, Jul 22, 2011 at 10:19 AM, Thomas Grant wrote:
>
>> Dear all,
>>
>> I'm attempting to align a series of structures using the CEAlign plug-in
&g
Dear all,
I'm attempting to align a series of structures using the CEAlign plug-in in
PyMOL due to a lack of any detectable sequence homology. CEAlign does a
good job of aligning and the fits are very reasonable. However, the RMSD
that is calculated is based only on the c-alphas that were actual
lopers or other python- or X11-savvy folks? I’m afraid I’m not one
> of them.
> >
> > Jared
> >
> > --
> > Jared Sampson
> > Xiangpeng Kong Lab
> > NYU Langone Medical Center
> > New York, NY 10016
> > (212) 263-7898
> >
> >
Hi all,
I'm using PyMOL version 1.3 installed via Fink on my MacBook Pro with Snow
Leopard 10.6.4. I've noticed a strange OS-specific bug when using the
Spaces feature of my Mac while running PyMOL. If I attempt to change Space,
my system appears to do some sort of restart, without actually rest
Hi all,
I've recently run a molecular dynamics simulation in Amber and have been
using PyMOL to create a simple movie of the trajectory. The smooth command
helps a lot with seeing the large motions I'm interested in. However, my
movie seems to run quite slow. Actually it runs quite fast, some 6
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-- Forwarded message --
From: Axel Brunger
Date: Thu, Nov 5, 2009 at 1:54 PM
Subject: [ccp4bb] Warren DeLano
To: ccp...@jiscmail.ac.uk
Dear CCP4 Community:
I write today with very sad news about Dr. Warren Lyfo
