Re: [PyMOL] [EXTERNAL] Student version

2023-10-06 Thread Thomas Charles Pochapsky
23-executive-committee-members> Center, ------------ *From:* Thomas Charles Pochapsky *Sent:* Friday, October 6, 2023 4:28 AM *To:* pymol-users@lists.sourceforge.net *Subject:* [EXTERNAL] [PyMOL] Student version Hi, all.  Did anybody ever reply about the student version of PyMol downloads?  I use it i

[PyMOL] Student version

2023-10-06 Thread Thomas Charles Pochapsky
Hi, all.  Did anybody ever reply about the student version of PyMol downloads?  I use it in my class on a regular basis, but I can no longer find the link on the Schrodinger web site.  There is a free download for Maestro, with which I am unfamiliar.   Is this a replacement? Thanks.  Tom __

[PyMOL] ramachandran plots

2020-06-09 Thread Thomas Charles Pochapsky
Is there a plug-in or command that will output a Ramachandran plot for a loaded PDB file? Thanks, Tom Pochapsky ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.n

[PyMOL] default water bond lengths in PyMOL

2017-01-03 Thread Thomas Charles Pochapsky
Hi, I exported a PDB file from PyMOL that includes explicit water from a dynamics track. However, many of the solvent molecules are either doubled (same residue number for two different waters) or truncated (missing a hydrogen, or a hydrogen given a separate residue number). I am assuming th