[PyMOL] Structural Allignment in PyMol

Hello  I want to know how PyMol does Structural allignment. I am writing a python script to allign protein structures(from MD simulations) and eventually calculate RMSD. Please can anyone provide me a source code or a helping material.Thanx in advance. Hira Batool Student of BS-Bioinformatics

[PyMOL] How Pymol reads a dcd file

Hello! I have psf and dcd files.I want to read them using my own script.So I want to know how PyMol reads dcd files.Can you please help me out in this regard by providing me some helping material or a script.  Thank you Hira Batool Student of BS-Bioinformatics Biosciences Department COMSATS Inst