Re: [PyMOL] Object name for each object in grid display mode

2022-07-19 Thread Suzuki, Rintarou
Hi Tomas, You can do it with the following script from pymol import cmd cmd.set('grid_mode', 1) ids = ("1A70", "1AG6", "1B9W", "1BJA", "1BM8", "1BMG", "1BOX", "1BTE", "1BXU", "1BXV", "1BYO", "1BYP") for i in ids: cmd.fetch(i) if i != "1A70": cmd.cealign("1A70", i+" & c. A") cmd.zoom("a

[PyMOL] black shadows on povray mesh2

2022-06-08 Thread Suzuki, Rintarou
Hello, Do you have any idea to calculate nice normal vectors that can be rendered cleanly? When I draw with povray using include files created by pymol, sometimes black shadows appear on the secondary structures, especially in the planes near perpendicular to the picture. I removed the normal