Re: [PyMOL] Is it possible in Pymol to determine Individual Bond, Dissociation Energy for any Bond in organic molecules?

2017-06-01 Thread Susmita/Rajib
And finally, Dr. Timofey Tyugashev, who was the first to post his response to my query, perhaps put in a comma between "Bond" and "Dissociation" in the subject head, "[PyMOL] Is it possible in Pymol to determine Individual Bond, Dissociation Energy for any Bond in organic molecules?" which changed

Re: [PyMOL] Is it possible in Pymol to determine Individual Bond, Dissociation Energy for any Bond in organic molecules?

2017-06-01 Thread Susmita/Rajib
[Quote] On 02/06/2017, Osvaldo Martin wrote: ...send me a private message if you want further details on this topic ...[/Quote] Sir, I wouldn't want to waste your precious time! Not chemical reaction per se, Sir, but only Bond Dissociation Energies of individual bonds breaking and bonds forming ..

Re: [PyMOL] Is it possible in Pymol to determine Individual Bond, Dissociation Energy for any Bond in organic molecules?

2017-06-01 Thread Susmita/Rajib
[Quote]...structural determination is performed with different programs that have nothing...[/Quote] Different programs?! Could you elaborate further please, Sir! What would be a comprehensive program for QM determination of individual Bond Dissociation Energy for any bond (particularly, organic)?

Re: [PyMOL] Is it possible in Pymol to determine Individual Bond, Dissociation Energy for any Bond in organic molecules?

2017-06-01 Thread Susmita/Rajib
No, Dr. Wassenaar, Sir! People have confused me. After two years, I am told that: [Quote]PyMol does not use QM methods. It also does not "determine the structures of molecules" [/Quote] I need my illustrious peers to clarify me regarding all my queries in all my posts in the present thread. --

Re: [PyMOL] Is it possible in Pymol to determine Individual Bond, Dissociation Energy for any Bond in organic molecules?

2017-06-01 Thread Susmita/Rajib
How come we see structures of molecules in PyMol? https://en.wikipedia.org/wiki/PyMOL -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _

Re: [PyMOL] Is it possible in Pymol to determine Individual Bond, Dissociation Energy for any Bond in organic molecules?

2017-05-31 Thread Susmita/Rajib
Thank you, Dr. Tyugashev, for replying to my query. Doesn't PyMol also use those QM methods to determine the structures of molecules? Then why not PyMol be capable of yielding such values for individual bonds? -- Check out

[PyMOL] Is it possible in Pymol to determine Individual Bond Dissociation Energy for any Bond in organic molecules?

2017-05-31 Thread Susmita/Rajib
Hello, Illustrious Members! I have a query: Let us assume one is in possession of a particular named organic reaction. In that reaction a set of reactants change into a set of products. It is very easy to observe in those named reactions as to which bonds have broken down to form other newer bonds.

Re: [PyMOL] Calculating center of mass for the entire protein

2017-04-06 Thread Susmita/Rajib
@Dr. Abdelzaher, Please don't feel terrible! Sorry to jump in to the thread. You have some of the nicest people around in this forum, especially, Dr. Holder and Dr.Wassenaar. Just remember to likewise offer to help newcomers and you will have played your part well. Regards, Rajib A Layperson On 06