Re: [PyMOL] invoke ramp_new without drawing 'ramp' CGO

2009-08-25 Thread Stephen Graham
tested, works, brilliant, thanks. Stephen 2009/8/25 Warren DeLano : > Stephen, > > ramp_new ramp-name, ... > > disable ramp-name > > Cheers, > Warren > >> -----Original Message- >> From: Stephen Graham [mailto:steph...@strubi.ox.ac.uk] >> Sent: T

[PyMOL] invoke ramp_new without drawing 'ramp' CGO

2009-08-25 Thread Stephen Graham
my_ramp' doesn't seem to hide the CGO, and issuing 'delete my_ramp' from within a script kills the colour ramp before it gets applied (to a surface, in this case, despite the order of operations in the script). Thanks, Stephen -- Dr Stephen Graham Division of Structural Bio

Re: [PyMOL] Re: [ccp4bb]: Current Stereo 3D Display Info

2006-01-31 Thread Stephen Graham
brand new CRT > monitor suitable for stereo 3D. If you find any others, please do let > us know! > > Cheers, > Warren > > -- > Warren L. DeLano, Ph.D. > Principal Scientist > > . DeLano Scientific LLC > . 400 Oyster Point Blvd., Suite 213 > . South San Francisco, CA 94080 USA > . Biz:(650)-872-0942 Tech:(650)-872-0834 > . Fax:(650)-872-0273 Cell:(650)-346-1154 > . mailto:war...@delsci.com > > > > -- Stephen Graham Crystallography Group School of Molecular and Microbial Biosciences University of Sydney

[PyMOL] Cutaway surface

2006-01-27 Thread Stephen Graham
sing pymol. I have tried playing with the lighting models and backpace culling (a-la set ambient=0; set direct=0.7; set reflect=0.0; set backface_cull=0) but they are not quite what I am after. Can anyone recommend a good way to achieve this effect? Thanks, Stephen -- Stephen Graham Crystallogr

[PyMOL] Super-smooth surfaces

2006-01-11 Thread Stephen Graham
face happy (fully connected) after having set the probe radius way up? Thanks, Stephen -- Stephen Graham Crystallography Group School of Molecular and Microbial Biosciences University of Sydney

[PyMOL] Re: PyMOL-users digest, Vol 1 #1088 - 1 msg

2005-12-21 Thread Stephen Graham
t; --__--__-- > > ___ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users -- Stephen Graham Crystallography Group School of Molecular and Microbial Biosciences University of Sydney

Re: Subject: [PyMOL] ray-trace stereoview

2005-06-12 Thread Stephen Graham
ization: Vertrees Dot Org > Date: Sun, 12 Jun 2005 19:46:44 -0500 > > Alejandro, > > Someone a while back wrote a beautiful script to do this for us. I > posted it on the wiki. Check out > http://www.pymolwiki.org/index.php/Stereo_Ray > > It should have all the

[PyMOL] A couple of movie questions

2003-09-18 Thread Stephen Graham
ll of a molecule, and then render the molecule rotating (for example) all within the one script I observe real differences b/w what should be identical frames. The clipping planes and the z camera distance move considerable. I can post code if that would help. Many thanks for info on any of the

[PyMOL] "Rolling your own" functions in PyMol

2003-01-07 Thread Stephen Graham
ble to use my already defined selections. -- Stephen Graham PhD candidate and nasty sysadmin Crystallography Group School of Molecular and Microbial Biosciences Building G08 University of Sydney New South Wales, 2006 Australia Ph: +61 2 9351 8197 Fax: +61 2 9351 4726