[PyMOL] PC based docking program!

Hello All, I would greatly appreciate if anyone can suggest a PC based docking program for teaching purposes? I am trying ArgusLab, but that seems too unstable. Thanks much! Sona --

[PyMOL] Re: help!

Thanks a lot for all your prompt replies. Correct usage: set stick_transparency, 0.7, ligand (hmmm) Sona On 5/17/05, Sona Vasudevan wrote: > > Hi! > I am getting the following error when I try to set stick transparency of > my object ligand > PyMOL>set stick_transpa

[PyMOL] help!

Hi! I am getting the following error when I try to set stick transparency of my object ligand PyMOL>set stick_transparency, ligand, 0.7 Traceback (most recent call last): File "C:\Program Files\DeLano Scientific\PyMOL/modules\pymol\setting.py", line 586, in set v = (float(value),) ValueError: i

[PyMOL] dotted line representation

Hi! Is there a way in pymol to represent superposition of two molecules one as a stick and the other as a dotted line? The purpose is to show a conformational change. (mol 1 as sticks and mol2 as dotted lines). Thanks! Sona

[PyMOL] (no subject)

Hello All, Need your help: I would like to overlay a cartoon representation onto a surface representation and would like to color certain residues that show up on the surface representation. This is what I did and recall doing awhile ago but it isn't working now. I would appreciate knowing what

[PyMOL] (no subject)

Hi! Just wondering if there is a way to save a pymol session like in Insight and setor if I want to get back to it. Thanks. sona Sona Vasudevan National Center for Biotechnology Information National Library of Medicine National