Hi Smith,
It will be in whatever folder pymol is launched from. If you launched pymol
from a specific place, it will be that folder. If not, it might be in the
system files for pymol, which will depend on your operating system and
architecture.
Shane
Shane Caldwell
McGill University
On Fri
Hi Smith,
You can type
>get_view
and copy the output into a txt file for later use. The output set_view
command will return the window to the same camera settings
Shane
Shane Caldwell
McGill University
On Tue, Nov 24, 2015 at 9:45 PM, Smith Liu wrote:
> Dear All,
>
> Suppose
(localhost))
Is there a mirror anywhere that can be used?
Shane Caldwell
McGill University
On Wed, Sep 9, 2015 at 1:02 AM, Jason Vertrees
wrote:
> Greetings,
>
> It's been a while, I hope this message finds everyone well.
>
> I'm writing to briefly let you know that I
1. Make the subunits into separate objects
2. Command
set cartoon_cylindrical_helices, on, [object name]
for the one you want to have cylinders
Shane Caldwell
McGill University
On Thu, Aug 27, 2015 at 4:01 AM, Smith Liu wrote:
> Dear All,
>
> Suppose a protein contains 2 subunits.
set cartoon_cylindrical_helices, on
http://www.pymolwiki.org/index.php/Cartoon_Helix_Settings
Shane Caldwell
McGill University
On Wed, Aug 26, 2015 at 10:38 AM, Smith Liu wrote:
> Dear All,
>
> Will you please tell me how to process so that a long helix will be shown
> as a long
re any way to selectively trace different objects with different
modes? Or am I better off tracing the objects into different files and
overlaying them in image processing software?
Shane Caldwell
McGill
2 ways:
On the menu:
Wizard --> Measurement --> click atom 1 --> click atom 2
On the prompt:
distance [selection of atom 1], [selection of atom 2]
Shane Caldwell
McGill University
On Wed, Jul 8, 2015 at 11:33 AM, Smith Liu wrote:
> Dear All,
>
> Pymol has the funct
, but
look around, it's there. You'll want to save it somewhere accessible on
your computer, then open it in pymol as you would any other file. Now, as
to how reliable that model is will depend on many factors, especially how
close of a homologue is out there for your protein.
Cheers,
id so that it would
write out those into the filename. In this case, it rotates 10 degrees
about the y axis for a full 360 degrees:
for i in range (1, 36):
cmd.turn("y", 10)
cmd.png("images/%s%s_%03d" % (molname, chainid, i*10))
fits your situation. Of course, if you're just looking for a few values,
PyMol's Measurement Wizard is a low-tech way to get a few distances.
Sorry if this isn't too helpful, but without knowing more about your
situation it's difficult to make recommendations.
Cheers,
Shane Cald
http://imgur.com/i46YH6r
Doubled once: http://imgur.com/Vy8oJfx
Doubled twice: http://imgur.com/q3gO0cI
Cheers,
Shane Caldwell
McGill University
On Thu, Dec 11, 2014 at 3:08 PM, Shane Caldwell
wrote:
> Hi Pymol Users,
>
> I have a problem drawing maps, and can't seem to find
below:
Parent map: http://imgur.com/i46YH6r
Doubled once: http://imgur.com/Vy8oJfx
Doubled twice: http://imgur.com/q3gO0cI
Thanks!
Shane Caldwell
McGill University
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