Re: [PyMOL] Ray tracing with no GUI yields segmentation fault

2014-01-15 Thread Ricardo O. S. Soares
Thomas Holder" > Para: "Ricardo O. S. Soares" > Cc: "pymol-users" > Enviadas: Quarta-feira, 15 de Janeiro de 2014 17:32:00 > Assunto: Re: [PyMOL] Ray tracing with no GUI yields segmentation > fault > Hi Ricardo, > you didn't mention that you laun

Re: [PyMOL] Ray tracing with no GUI yields segmentation fault

2014-01-15 Thread Ricardo O. S. Soares
istry and Physics Faculty of Pharmaceutical Sciences at Ribeirão Preto University of São Paulo - Brazil - Mensagem original - > De: "Thomas Holder" > Para: "Ricardo O. S. Soares" > Cc: "pymol-users" > Enviadas: Terça-feira, 14 de Janeiro de 20

[PyMOL] Ray tracing with no GUI yields segmentation fault

2014-01-14 Thread Ricardo O. S. Soares
Hello everyone, I wrote a python script where pymol performs some color changes, ray tracing and image export. The script works perfectly if I enable the GUI, however if I load pymol without the GUI (-c flag) I receive a segmentation fault error. I found out that this issue is resolved by com

Re: [PyMOL] How to install g_mdmat from Gromacs package into PyMOL

2012-03-07 Thread Ricardo O. S. Soares
ation/Installation_Instructions/Windows Since, under these conditions, integration with pymol may pose some challenge (as Dr. Wassenaar wrote), I'd recommend that you use a linux system, or a virtual machine. Cheers, Ricardo.   ---  Ricardo O. S. Soares , PhD Student. Group of Biologic

Re: [PyMOL] custom textures

2011-08-31 Thread Ricardo O. S. Soares
Hello Shiven, thanks for the Blender tip! Cheers!   ---  Ricardo O. S. Soares , PhD Student. Group of Biological Physics - Department of Physics & Chemistry Faculty of Pharmaceutical Sciences at Ribeirão Preto - University of São Paulo. > >De:

[PyMOL] APBS Plugin: protein out of grid

2011-05-05 Thread Ricardo O. S. Soares
Dear users, there's a particular case where I'm using the APBS plugin and the resultant grid leaves a portion of the protein out of it. This portion is show in full white because no potential is calculated there. Why isnt the grid centered as usual? Changing the values by hand and them recaulc