On Monday 16 July 2007 03:14:32 Martin Höfling wrote:
> Am Freitag, 13. Juli 2007 schrieb Joris Beld:
>
> Gruezi Boris,
>
> > I do not want to start a linux distribution war but we are curious under
> > which distribution pymol is developed/tested and what people generally
> > are using to run pymo
I needed to have a measurement of the "actual" physical long dimension of a
protein model to compare with x-ray scattering data. I activated the surface
mesh feature and at the extreme ends of the longest axis, right at the
surface boundary, created a carbon atom at each position, then simply u
I would like to make some settings I use permanent and default in pymol
because every time I start pymol or reinitialize and load a new pdb/pse I
have to make a series of changes again in the settings. Is there a file that
pymol uses to set its default settings? What is its name?
I want seque
or useful for
> handling conformational changes when starting from valid 3D geometries.
>
>
> If you are forming bonds or building molecules from scratch, then you'll
> need to use an external tool like OpenEye's Szybki or Schrodinger's
> MacroModel in order to
I have produced several threading models of a protein (the app threader 3.5
can output pdb format models) I am studying. The models are OK for the most
part but there are often odd gaps in which the peptide backbone has simply
been "broken" and the ends separated by some distance - but they sho
Would it be possible to add setting to pymol for a default working directory?
Along with this, perhaps a setting that, by default, ignores hidden
directories? As it now stands, whenever I fire up pymol on linux, I have to
navigate down a huge list of hidden directories to find the directory, t
xport the lib path (export or setenv LD_LIBRARY_PATH)
>
> Regards
>
> Andrea
>
> 2006/4/12, Praedor Atrebates :
> > Great! Thank you. I've just finished trying and failing to get pymol to
> > build again on my AMD64 Mandriva system. It invariably fails quick
Great! Thank you. I've just finished trying and failing to get pymol to
build again on my AMD64 Mandriva system. It invariably fails quickly with:
layer0/Crystal.c:314:1: error: unterminated argument list invoking macro
"sprintf"
layer0/Crystal.c: In function 'CrystalDump':
layer0/Crystal.c:2
Is anyone running pymol on an AMD64 system? If so, did you find a prebuilt
binary or did you build it yourself? If you built it yourself...HOW DID YOU
DO IT? I'd greatly appreciate help in this regard.
Thank you,
praedor
--
The Reichstag fire is to Hitler as 9/11 is to Bush
pgpACeS5iFOVQ.
On Wednesday 22 March 2006 09:05 am, Joao Renato Carvalho Muniz wrote:
> Or using Gimp (on Linux and window$).
> Mark A Saper wrote:
> > You can easily change the resolution (dpi) of an image without
> > changing the number of pixels, by editing the file in Photoshop (in
> > Image Size, change res
I have been trying to build and install pymol-0.99rc from source because the
binary version will not work on my system (there appears to be an
incompatibility in my recently updated python install and the provided pymol
- rebuilding on my pentiumpro system worked fine). I have managed to get
t
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