Re: [PyMOL] Compare two structures with the same connectivity butdifferent stereochemistry?

aligned. > ExecutiveRMS: 2 atoms rejected during cycle 1 (RMSD=5.48). > Executive: RMSD =5.238 (91 to 91 atoms) > > From: Peng Yu > Sent: 2020年3月25日 6:28 > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Compare two structures with the same connectivity > butdif

[PyMOL] Compare two structures with the same connectivity but different stereochemistry?

I'd like to compare the difference between the two structures which have the same connectivity but different stereochemistry. Could anybody show me if there is a way to do so in pymol? Thanks. http://tcmspw.com/tcmspmol/MOL002088.mol2 http://tcmspw.com/tcmspmol/MOL002424.mol2 -- Regards, Peng