Hi,
Your assumptions are correct, as I've copied and tested your code, which
works fine from the current working directory where I ran the pymol start
script. It's probably a quirk w/ your installation? Otherwise, you can just
specify the full path to your script or "cd" into the folder... either
> get_view()
> and restore that view in all other proteins
> (2) PyMOL has a preset view for ligand binding sites; A > Preset >
> Ligand Sites > Transparent (better) is a good one.
>
> Good luck,
>
> -- Jason
>
> On Thu, May 6, 2010 at 1:00 AM, Paul Rigor (uci-ics)
Hi,
Is there anyway to access the rendering engine of pymol through a
command line script?
I'd like to take a snapshot of a ligand-bound protein, but automate
the view such that
1) The protein is shown as a surface
2) The view centers around the binding area
3) The view zooms out enough to presen
