Re: [PyMOL] cartoon range transparency help

2018-07-23 Thread Paul Miller
Centre for Human Genetics Division of Structural Biology Roosevelt Drive Oxford OX3 7BN   -Original Message- From: "Jarrett Johnson" To: "Paul Miller" Cc: "Pymol User list" Date: 07/23/18 15:47 Subject: Re: [PyMOL] cartoon range transparency help Hello,

[PyMOL] cartoon range transparency help

2018-07-23 Thread Paul Miller
Hi I have Pymol version 2 When I try to make a range of a cartoon transparent e.g. I type: set cartoon_transparency, 0.5, /4COF//A/1:20  it comes up with following error: Setting-Warning: 'cartoon_transparency' is a object-state-level setting Does this mean one cannot make

[PyMOL] carving MTZ map

2018-04-16 Thread Paul Miller
Hi I'm using Windows Pymol 2.0 and would like to show mtz (NOT ccp4!) file 2fofc density around a ligand. Can anyone tell me how to do this? I found info on a website (below), which I modified in various ways but it didn't work. Kept saying the some.2fofc file was not found. volume abc, some.2