[PyMOL] Introducing hydrogen bonds between ligand and target in pymol that runs on linux ubuntu operating system

2012-09-29 Thread Mona Kab Omir
Hei I have a question about how to introduce hydrogen bonds between ligands and target molecule in pymol that runs on linux ubuntu 12.04 operative system. I have searched and tried to type following command: set h_bond_cutoff_center, 3.6 set h_bond_cutoff_edge, 3.2 and I tried to choose [A]-> [f

[PyMOL] question

2012-09-18 Thread Mona Kab Omir
hi Jason I am currently using pymol and I have I question about 3D cartoon > structures: > I am very interested to here if it is possible to align a stick structure > with a cartoon strucrture in Pymol? > Is it possible to put the short aa code or name in the peptide structure in > pymol? sincerel