[PyMOL] syntax for lone pair removal

2012-05-29 Thread Martin Stoermer
Hi folks, when visualising data out of a GOLD docking run, where the software has added lone pairs to active site residues and ligands is it possible to remove them post hoc in Pymol? The "atoms" look like: 62 45.6415 30.9229 12.1185 LP 1 <1> 0.00

[PyMOL] movie in H.264 yields one frame

2011-11-10 Thread Martin Stoermer
__ Dr. Martin Stoermer Senior Research Officer INSTITUTE FOR MOLECULAR BIOSCIENCE University of Queensland 4072 AUSTRALIA Phone: +61-7-3346 2991 Fax: +61-7-3346 2101 Email:martin.stoer...@uq.edu.au http://www.i

Re: [PyMOL] Saving high resolution image

2009-10-22 Thread Martin Stoermer
er stopped. -Martin The requested size is 20" by 30". I calculated that it would correspond to a 6000 x 9000 pixel image. How can I create such a large ray traced image without crashing the computer? Dr. Martin Stoermer Institute For Molecular Bioscience Ph

[PyMOL] seq_view and SD files

2008-05-24 Thread Martin Stoermer
; (1) 2681-83-6 > (1) 195.0449 thanks, Martin Dr. Martin Stoermer Institute For Molecular Bioscience University of Queensland