[PyMOL] display problem (slab?)

2005-08-16 Thread Marc Vogt
Hi all For some reason I am now having a strange problem when I use pymol to display molecules. It acts sort of like it is in slab mode where some of the molecule fades into nothingness. However, when I spin the molecule, the same regions remain invisible. If it were a true slab effect, the reg

[PyMOL] loop/coil thickness

2005-07-27 Thread Marc Vogt
Hello all I want to increase loop/coil thickness while preserving the standard cartoon for alpha and beta regions. I like the thickness that is a result of "cartoon tube, all", but it removes the regular cartoon depictions in the helical and beta regions. Any ideas? thanks, Marc