Re: [PyMOL] Install pymol as module in python in linux

2017-08-09 Thread Leandro Bortot
Hi, I also had some problem with this. The "trick", I believe, is to compile/install pymol with: python2.7 setup.py build install --home=path_to_pymol/ --install-lib=path_to_pymol/modules/ --install-scripts=path_to_pymol/ The part you are interested in is the modules. I needed to instal

Re: [PyMOL] (no subject)

2017-04-04 Thread Leandro Bortot
Hi, You probably have a pdb file which has multiple possible conformations for some residues. You can check this by visual inspection of such residues. They have two side chains coming from the same CA. In the text file you can see the conformations marked as A and B in the residue name field

[PyMOL] How can I iterate scenes smoothly?

2016-05-15 Thread Leandro Bortot
Dear users, I'm trying to make a movie during which a surface changes its color. I followed the tutorials from the wiki and successfully created two scenes with the desired colors. However, I can't make them iterate smoothly. Instead, The first half of the frames display the first scene

[PyMOL] Iterate scenes smoothly

2016-05-09 Thread Leandro Bortot
Dear users, I'm trying to make a movie during which a surface changes its color. I followed the tutorials from the wiki and successfully created two scenes with the desired colors. However, I can't make them iterate smoothly. Instead, The first half of the frames display the first scene