[PyMOL] Autodock Plugin Problem

Dear all, I have a problem running autodock 4 using autodock plugin in pymol. The pymol automatically shut down once I run the autogrid. I read the webpage saying that I have to turn the feature off by setting the environmental variable to ADPLUGIN_NO_OUTPUT_REDIRECT I am not very famili

Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 10

; >>> When replying, please edit your Subject line so it is more specific >>> than "Re: Contents of PyMOL-users digest..." >>> >>> >>> Today's Topics: >>> >>> 1. Re: coordinate systems of pymol and povray (Tsjerk Wassen

Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 10

ers-ow...@lists.sourceforge.net > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of PyMOL-users digest..." > > > Today's Topics: > > 1. Re: coordinate systems of pymol and povray (Tsjerk Wassenaar) > 2. FreeMOL (Ja

Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 9

t; > > ---------- > > Message: 1 > Date: Tue, 16 Feb 2010 11:06:40 -0800 > From: Kin Sing Stephen Lee > Subject: [PyMOL] Autodock plugin > To: "pymol-users@lists.sourceforge.net" > > Message-

[PyMOL] Autodock plugin

Dear all, This is the first time for me to use the autodock plugin and I have some simple questions. I'm using Macbook Pro (OS X v 10.5 - leopard). Autodock and autodock tools run fine in the X11 terminal. In the autodock plugin, I need to put in the autodock tool program path,so I put

Re: [PyMOL] PyMOL-users Digest, Vol 44, Issue 4

Dear all, I have a question regarding the movie setting. I was trying to make movie from pymol. However, even I've set the background as white, the movie that I saved has a grey background. I am wondering if there is any trick to fix this. Thank you very much Sing On Jan 11, 2010, at 1

[PyMOL] Question about measuring volume

Dear all, I am wondering if it is possible for me to measure the volume of the binding pocket or the molecule in pymol? If no, any recommend program for Mac for such purposes? Thank you very much Sing -- This SF.Net

[PyMOL] 2. pymol autodock plugin (Daniel Seeliger)

I have the same problem on loading autodock plugin while i'm using macpymol 1.1 I have installed both numpy and python Could you please help me with that? Thank you very much sing On Sep 17, 2009, at 12:15 PM, pymol-users- requ...@lists.sourceforge.net wrote: > Send PyMOL-users mailing l

[PyMOL] Binding pocket volume calculation

Dear all, I'm just wondering is it possible to calculate the ligand volume and also the volume of the binding pocket from pymol? If no, do you have any program that allow me to do so? Thank you very much All the best, Sing