Re: [PyMOL] slab

2004-09-01 Thread Kenneth Dale Westover
Sorry, I responded off the list last time the the question. You have to render two pictures: 1. one with slabbing you want for the surface (include the ligand) 2. one with slabbing you want (change clipping planes only) for the ligand (disable the surface for this) In photoshop (or equivalent), s

[PyMOL] color gradient

2004-09-01 Thread Kenneth Dale Westover
Perhaps someone knows a better way to do this - I'm trying to make a color gradient on a surface based on distance from some selection using code like this: for a in range (1:100):\ cmd.set_color("mycolor",[1,1,a/100])\ cmd.color mycolor, my_surface within ((-1/100*a)+1) of my_selection Now I

[PyMOL] opaque interiors flag

2004-03-26 Thread Kenneth Dale Westover
Anyone know the command (for scripting) to set the opaque interiors flag? In the GUI it's under Display > Rendering > Opaque Interiors. Thanks, Ken