o the selection. Can anyone help me out, please?
Best,
Jose Borreguero
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Dear pymol users,
When I click in an atom (mouse->selection mode->atoms) I get the
/chain_name/residue_name/atom_name info string. Is there a way to output
the atom serial or atom index?
My molecule has atoms with duplicate names within the same residue, so the
info string chain_name/residue_name/
Whoohoo! it works like a charm. Thank you :D
On Mon, Feb 20, 2012 at 2:41 PM, João Rodrigues wrote:
> Use byres().
>
> select neighbours, byres( chain A w. 4A of chain B)
>
> Cheers,
>
> João
>
--
Try before you buy =
Selection 'X around 4.0' selects all atoms within 4.0 of object/selection
X. However, how do I select all residues within 4.0 of X?
The condition I need is that if at least one atom of residue Y is within
4.0 of X, then all the atoms of Y are to be selected. How do I express this
condition with the
Dear Pymol users,
I want to draw a cloud of points aroud a particular atom, provided I have
the coordinates for each point of the cloud. How can I do this?
-Jose
--
___
PyMOL-u
I am rather new to pymol. Now, I want to use it as a module withing a python
script but importing the module brings up the GUI when I execute the script.
See below the toy script:
#!/usr/bin/python
from pymol import cmd
cmd.load('foo.pdb')
This script, when executed in my machine, will pop up the
I have a pdb with only CA entries. I did "set ribbon_trace,1" and "show
ribbon" to see the c-alpha trace, but is there a way to control the
thickness of the lines connecting the CA's ?
jose
