Re: [PyMOL] Outline width for ray tracing

sites, Slashdot.org! http://sdm.link/slashdot > _______ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.so

Re: [PyMOL] Segmentation fault

t familiar with gdb, but considering that > you already spend time on this problem and are willing to spend more, I > think it's worthwhile. > > Cheers, > Thomas > > On 11 Apr 2017, at 19:08, João M. Damas wrote: > > > Thanks for the feedback, Folmer! > &g

Re: [PyMOL] Segmentation fault

I get a working pymol with revision 4170. > > Have you tried creating a new user and test pymol from that account? That > should help you identify if it is solely a problem with your own account. > > HTH, > Folmer > > > On 2017-03-28 03:15, João M. Damas wrote: > > Nobody e

Re: [PyMOL] Calculating center of mass for the entire protein

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Re: [PyMOL] Segmentation fault

Nobody experiencing the same issues? Any tips on what I may be doing wrong on the installation? João On Fri, Mar 17, 2017 at 4:08 PM, João M. Damas wrote: > Dear all, > > I started experiencing segmentation fault on a pymol that I had installed > through the omnia channel on conda.

[PyMOL] Segmentation fault

s: ``` Executive: Loading version 1.803 session... ./pymol: line 3: 29221 Segmentation fault "/usr/bin/python2.7" "/data/joao/maindisk/software/pymol-svn/modules/pymol/__init__.py" "$@" ``` Any clues? Am I doing something wrong? Thanks, João -- João M. Damas P

Re: [PyMOL] how to keep the atom order when convert mol2 file to pdb in pymol

w and other flows. Make informed decisions using capacity > planning reports. http://sdm.link/zohodev2dev > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://ww

[PyMOL] pymolwiki down

Hi guys, Am I the only one experiencing problems accessing pymolwiki.org? I guess people are using google cache, but any idea of when it will be working again? Best, João -- João M. Damas PhD Student Protein Modelling Group ITQB-UNL, Oeiras, Portugal Tel:+351-214469613

Re: [PyMOL] Iterate scenes smoothly

; PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- João M. Damas PhD Student Protein Modelling Group ITQB-UNL, Oeiras, Portugal Tel:+

Re: [PyMOL] on contact surface and domain angle

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Re: [PyMOL] Using cartoon putty-like command

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Re: [PyMOL] slab settings

Cmd.get_view gives you a matrix where the 9th, 10th and 11th numbers give you the origin of rotation relative to the camera, and 15th and 16th gives you the front and rear plane distance from the camera, respectively. That plus some math, and I think you are done. Maybe there is an easier way thou

Re: [PyMOL] hiding unreal bonds

> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- João M. Damas PhD Student Protei

Re: [PyMOL] transparent figure

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Re: [PyMOL] Pymol molecular visualisation

s@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- João M. Damas PhD Student Protein Modelling Group ITQB-UNL, Oeiras, Portugal Tel:+351-214469613 ---

[PyMOL] movie.produce async off

t for movie.produce to finish? Like, a wait command, maybe? If not, I think that a possible improvement would be to make an async flag like in fetch. Cheers, João -- João M. Damas PhD Student Protein Modelling Group ITQB-UNL, Oeiras, Portugal Tel:+351-2144